PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 218aa    MW: 25211.9 Da    PI: 9.5137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17852147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+++ eEd+l+++++ +lGg+ W++Ia +++ gRt++++k++w++ 
   XP_016499013.1  8 RGNFSREEDDLIIRLHSLLGGR-WSLIAGRLQ-GRTDNEIKNHWNTN 52
                     89********************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.085157IPR017930Myb domain
SuperFamilySSF466892.42E-14361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-21458IPR009057Homeodomain-like
SMARTSM007173.1E-15755IPR001005SANT/Myb domain
PfamPF002493.0E-15853IPR001005SANT/Myb domain
CDDcd001677.37E-101053No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MHQTGIKRGN FSREEDDLII RLHSLLGGRW SLIAGRLQGR TDNEIKNHWN TNLLKKLKAA  60
GIQPKPKKLT AKGTKPSKKK QEKRRRAGKA KKPEREMEKD ELVKKIQVHI PKPIRLYSLS  120
SSQSSFQDKA EHNIITMLSS EEVDNKNKEE EKIQEPSISS SLSSSVQVEE KETEIYEKIQ  180
LFDELLNGCD FSTECLEPTS CCYMLKEVYK EYFQLLNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499013.11e-160PREDICTED: transcription factor WER-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1824834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-25myb domain protein 3